IL_8RJD_141

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_141 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.0389

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8RJD|1|K|G|4534
8RJD|1|K|A|4535
8RJD|1|K|C|4536
*
8RJD|1|K|G|4550
8RJD|1|K|U|4551
8RJD|1|K|U|4552

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8