IL_8RJD_165

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_165 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.0912

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8RJD|1|K|A|5014
8RJD|1|K|G|5015
8RJD|1|K|A|5016
8RJD|1|K|G|5017
*
8RJD|1|K|C|5032
8RJD|1|K|G|5033
8RJD|1|K|A|5034
8RJD|1|K|U|5035

Current chains

Chain K

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

Large ribosomal subunit protein eL22