IL_8RL2_051

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_051 not in the Motif Atlas

Homologous match to IL_8P9A_259

Geometric discrepancy: 0.1127

The information below is about IL_8P9A_259

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8RL2|1|L5|G|1586
8RL2|1|L5|G|1587
8RL2|1|L5|U|1588
8RL2|1|L5|C|1589
*
8RL2|1|L5|G|1605
8RL2|1|L5|U|1606
8RL2|1|L5|C|1607

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CL

Zinc finger protein 593

Chain Lj

60S ribosomal protein L37