IL_8RL2_111

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GUA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_111 not in the Motif Atlas

Geometric match to IL_8C3A_047

Geometric discrepancy: 0.2712

The information below is about IL_8C3A_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8RL2|1|L5|G|4201
8RL2|1|L5|U|4202
8RL2|1|L5|A|4203
*
8RL2|1|L5|U|4229
8RL2|1|L5|C|4230
8RL2|1|L5|C|4231

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CK

Ribosome biogenesis regulatory protein homolog

Chain LJ

60S ribosomal protein L11

Chain LT

60S ribosomal protein L21