IL_8RM5_011
3D structure
- PDB id
- 8RM5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPyS complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- AACG*CGUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RM5_011 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2242
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
8RM5|1|6|A|35
8RM5|1|6|A|36
8RM5|1|6|C|37
8RM5|1|6|G|38
*
8RM5|1|z|C|9
8RM5|1|z|G|10
8RM5|1|z|U|11
8RM5|1|z|U|12
Current chains
- Chain 6
- U6 snRNA
- Chain z
- 5'SS oligo
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- Thioredoxin-like protein 4A
- Chain N
- Pre-mRNA-processing factor 6
Coloring options: