IL_8RPY_027

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

8RPY|1|A|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_027 not in the Motif Atlas

Geometric match to IL_5J7L_271

Geometric discrepancy: 0.1134

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8RPY|1|A|G|862
8RPY|1|A|A|863
*
8RPY|1|A|U|913
8RPY|1|A|G|914
8RPY|1|A|C|915

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL27