IL_8RPY_052

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8RPY|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_052 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1457

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8RPY|1|A|C|1417
8RPY|1|A|G|1418
8RPY|1|A|A|1419
8RPY|1|A|A|1420
8RPY|1|A|G|1421
*
8RPY|1|A|C|1577
8RPY|1|A|U|1578
8RPY|1|A|A|1579
8RPY|1|A|A|1580
8RPY|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains