IL_8RPY_080

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8RPY|1|A|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_080 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.0816

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8RPY|1|A|U|2081
8RPY|1|A|A|2082
8RPY|1|A|G|2083
*
8RPY|1|A|U|2236
8RPY|1|A|G|2237
8RPY|1|A|G|2238
8RPY|1|A|G|2239

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain X

Large ribosomal subunit protein bL28