IL_8RPY_082

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AUU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_082 not in the Motif Atlas

Geometric match to IL_5TBW_021

Geometric discrepancy: 0.1638

The information below is about IL_5TBW_021

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8RPY|1|A|A|2097
8RPY|1|A|U|2098
8RPY|1|A|U|2099
*
8RPY|1|A|G|2190
8RPY|1|A|A|2191
8RPY|1|A|U|2192

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9