IL_8RPY_085

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

8RPY|1|A|G|2112, 8RPY|1|A|U|2113, 8RPY|1|A|G|2116, 8RPY|1|A|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPY|1|A|A|2108
8RPY|1|A|U|2109
8RPY|1|A|G|2110
8RPY|1|A|U|2111
8RPY|1|A|G|2112
8RPY|1|A|U|2113
8RPY|1|A|A|2114
8RPY|1|A|G|2115
8RPY|1|A|G|2116
8RPY|1|A|A|2117
8RPY|1|A|U|2118
8RPY|1|A|A|2119
8RPY|1|A|G|2120
*
8RPY|1|A|C|2178
8RPY|1|A|C|2179
8RPY|1|A|U|2180
8RPY|1|A|U|2181

Current chains

Chain A

23S ribosomal RNA

Nearby chains