IL_8RPY_105

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_105 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.1171

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8RPY|1|A|C|2652
8RPY|1|A|U|2653
8RPY|1|A|A|2654
8RPY|1|A|G|2655
8RPY|1|A|U|2656
8RPY|1|A|A|2657
8RPY|1|A|C|2658
*
8RPY|1|A|G|2663
8RPY|1|A|G|2664
8RPY|1|A|A|2665
8RPY|1|A|C|2666
8RPY|1|A|C|2667
8RPY|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6