IL_8RPY_125

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

8RPY|1|A|U|2132, 8RPY|1|A|G|2168, 8RPY|1|A|A|2170, 8RPY|1|A|A|2171, 8RPY|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPY|1|A|G|2124
8RPY|1|A|G|2125
8RPY|1|A|A|2126
8RPY|1|A|G|2127
8RPY|1|A|G|2128
8RPY|1|A|C|2129
8RPY|1|A|U|2130
8RPY|1|A|U|2131
8RPY|1|A|U|2132
8RPY|1|A|G|2133
8RPY|1|A|A|2134
8RPY|1|A|A|2135
8RPY|1|A|G|2136
8RPY|1|A|U|2137
*
8RPY|1|A|A|2154
8RPY|1|A|U|2155
8RPY|1|A|G|2156
8RPY|1|A|G|2157
8RPY|1|A|A|2158
8RPY|1|A|G|2159
8RPY|1|A|C|2160
8RPY|1|A|C|2161
8RPY|1|A|G|2162
8RPY|1|A|A|2163
8RPY|1|A|C|2164
8RPY|1|A|C|2165
8RPY|1|A|U|2166
8RPY|1|A|U|2167
8RPY|1|A|G|2168
8RPY|1|A|A|2169
8RPY|1|A|A|2170
8RPY|1|A|A|2171
8RPY|1|A|U|2172
8RPY|1|A|A|2173
8RPY|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains