IL_8RPZ_001
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPZ_001 not in the Motif Atlas
- Homologous match to IL_7RQB_001
- Geometric discrepancy: 0.0835
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RPZ|1|A|G|24
8RPZ|1|A|U|25
8RPZ|1|A|G|26
8RPZ|1|A|G|27
8RPZ|1|A|A|28
8RPZ|1|A|U|29
8RPZ|1|A|G|30
*
8RPZ|1|A|C|510
8RPZ|1|A|U|511
8RPZ|1|A|G|512
8RPZ|1|A|A|513
8RPZ|1|A|A|514
8RPZ|1|A|A|515
8RPZ|1|A|C|516
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain Q
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein uL22
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