IL_8RPZ_009

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

8RPZ|1|A|U|276, 8RPZ|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3748

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8RPZ|1|A|C|274
8RPZ|1|A|C|275
8RPZ|1|A|U|276
8RPZ|1|A|G|277
8RPZ|1|A|A|278
8RPZ|1|A|A|279
8RPZ|1|A|U|280
8RPZ|1|A|C|281
*
8RPZ|1|A|G|359
8RPZ|1|A|U|360
8RPZ|1|A|G|361
8RPZ|1|A|A|362
8RPZ|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains