IL_8RPZ_012

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_012 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.0749

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8RPZ|1|A|G|536
8RPZ|1|A|G|537
8RPZ|1|A|A|538
8RPZ|1|A|G|539
*
8RPZ|1|A|U|554
8RPZ|1|A|G|555
8RPZ|1|A|A|556
8RPZ|1|A|C|557

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20