IL_8RPZ_040

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

8RPZ|1|A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPZ|1|A|C|1043
8RPZ|1|A|C|1044
8RPZ|1|A|C|1045
8RPZ|1|A|A|1046
8RPZ|1|A|G|1047
8RPZ|1|A|A|1048
8RPZ|1|A|C|1049
8RPZ|1|A|A|1050
8RPZ|1|A|G|1051
8RPZ|1|A|C|1052
*
8RPZ|1|A|G|1107
8RPZ|1|A|U|1108
8RPZ|1|A|C|1109
8RPZ|1|A|G|1110
8RPZ|1|A|A|1111
8RPZ|1|A|G|1112

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6