IL_8RPZ_044

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8RPZ|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_044 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.0885

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

8RPZ|1|A|G|1202
8RPZ|1|A|U|1203
8RPZ|1|A|A|1204
8RPZ|1|A|A|1205
8RPZ|1|A|G|1206
*
8RPZ|1|A|U|1240
8RPZ|1|A|A|1241
8RPZ|1|A|U|1242
8RPZ|1|A|C|1243

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15