IL_8RPZ_061

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_061 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0696

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8RPZ|1|A|G|1651
8RPZ|1|A|A|1652
8RPZ|1|A|G|1653
8RPZ|1|A|A|1654
8RPZ|1|A|A|1655
8RPZ|1|A|C|1656
*
8RPZ|1|A|G|2004
8RPZ|1|A|A|2005
8RPZ|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein bL17