IL_8RPZ_065

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8RPZ|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_065 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0779

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8RPZ|1|A|C|1686
8RPZ|1|A|G|1687
8RPZ|1|A|U|1688
8RPZ|1|A|A|1689
8RPZ|1|A|A|1690
8RPZ|1|A|C|1691
*
8RPZ|1|A|G|1696
8RPZ|1|A|G|1697
8RPZ|1|A|A|1698
8RPZ|1|A|G|1699
8RPZ|1|A|A|1700
8RPZ|1|A|A|1701
8RPZ|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2