IL_8RPZ_084

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_084 not in the Motif Atlas

Geometric match to IL_4P3U_006

Geometric discrepancy: 0.3668

The information below is about IL_4P3U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8RPZ|1|A|U|2099
8RPZ|1|A|G|2100
8RPZ|1|A|A|2101
*
8RPZ|1|A|U|2188
8RPZ|1|A|U|2189
8RPZ|1|A|G|2190

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9