IL_8RPZ_087

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

8RPZ|1|A|G|2112, 8RPZ|1|A|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPZ|1|A|A|2108
8RPZ|1|A|U|2109
8RPZ|1|A|G|2110
8RPZ|1|A|U|2111
8RPZ|1|A|G|2112
8RPZ|1|A|U|2113
8RPZ|1|A|A|2114
8RPZ|1|A|G|2115
8RPZ|1|A|G|2116
8RPZ|1|A|A|2117
8RPZ|1|A|U|2118
8RPZ|1|A|A|2119
8RPZ|1|A|G|2120
*
8RPZ|1|A|C|2178
8RPZ|1|A|C|2179
8RPZ|1|A|U|2180
8RPZ|1|A|U|2181

Current chains

Chain A

23S ribosomal RNA

Nearby chains