IL_8RPZ_088

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGUGG*CCACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGUGG,CCACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPZ|1|A|G|2120
8RPZ|1|A|G|2121
8RPZ|1|A|U|2122
8RPZ|1|A|G|2123
8RPZ|1|A|G|2124
*
8RPZ|1|A|C|2174
8RPZ|1|A|C|2175
8RPZ|1|A|A|2176
8RPZ|1|A|C|2177
8RPZ|1|A|C|2178

Current chains

Chain A

23S ribosomal RNA

Nearby chains