IL_8RPZ_097

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_097 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1669

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

8RPZ|1|A|A|2459
8RPZ|1|A|U|2460
8RPZ|1|A|A|2461
*
8RPZ|1|A|U|2489
8RPZ|1|A|G|2490
8RPZ|1|A|U|2491
8RPZ|1|A|U|2492
8RPZ|1|A|U|2493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16