IL_8RPZ_108

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

8RPZ|1|A|C|2712, 8RPZ|1|A|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_108 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8RPZ|1|A|U|2695
8RPZ|1|A|U|2696
*
8RPZ|1|A|A|2711
8RPZ|1|A|C|2712
8RPZ|1|A|U|2713
8RPZ|1|A|G|2714

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17

Chain P

Large ribosomal subunit protein bL19