IL_8RPZ_120

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8RPZ|1|A|U|846, 8RPZ|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_120 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.3313

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8RPZ|1|A|A|844
8RPZ|1|A|A|845
8RPZ|1|A|U|846
8RPZ|1|A|U|847
8RPZ|1|A|C|848
*
8RPZ|1|A|G|930
8RPZ|1|A|U|931
8RPZ|1|A|U|932
8RPZ|1|A|A|933
8RPZ|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL30