IL_8RPZ_122
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC
- Length
- 40 nucleotides
- Bulged bases
- 8RPZ|1|A|U|1061, 8RPZ|1|A|U|1065, 8RPZ|1|A|U|1066, 8RPZ|1|A|A|1067, 8RPZ|1|A|A|1070, 8RPZ|1|A|C|1072
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RPZ|1|A|G|1055
8RPZ|1|A|G|1056
8RPZ|1|A|A|1057
8RPZ|1|A|U|1058
8RPZ|1|A|G|1059
8RPZ|1|A|U|1060
8RPZ|1|A|U|1061
8RPZ|1|A|G|1062
8RPZ|1|A|G|1063
8RPZ|1|A|C|1064
8RPZ|1|A|U|1065
8RPZ|1|A|U|1066
8RPZ|1|A|A|1067
8RPZ|1|A|G|1068
8RPZ|1|A|A|1069
8RPZ|1|A|A|1070
8RPZ|1|A|G|1071
8RPZ|1|A|C|1072
8RPZ|1|A|A|1073
8RPZ|1|A|G|1074
8RPZ|1|A|C|1075
8RPZ|1|A|C|1076
8RPZ|1|A|A|1077
8RPZ|1|A|U|1078
8RPZ|1|A|C|1079
8RPZ|1|A|A|1080
8RPZ|1|A|U|1081
8RPZ|1|A|U|1082
8RPZ|1|A|U|1083
8RPZ|1|A|A|1084
8RPZ|1|A|A|1085
8RPZ|1|A|A|1086
8RPZ|1|A|G|1087
8RPZ|1|A|A|1088
8RPZ|1|A|A|1089
8RPZ|1|A|A|1090
*
8RPZ|1|A|U|1101
8RPZ|1|A|C|1102
8RPZ|1|A|A|1103
8RPZ|1|A|C|1104
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36A
- Chain M
- Large ribosomal subunit protein uL16
Coloring options: