IL_8RPZ_123

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_123 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0672

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8RPZ|1|A|G|1666
8RPZ|1|A|G|1667
8RPZ|1|A|A|1668
8RPZ|1|A|A|1669
8RPZ|1|A|C|1670
8RPZ|1|A|U|1671
8RPZ|1|A|A|1672
8RPZ|1|A|G|1673
8RPZ|1|A|G|1674
*
8RPZ|1|A|C|1990
8RPZ|1|A|U|1991
8RPZ|1|A|G|1992
8RPZ|1|A|U|1993
8RPZ|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain K

Large ribosomal subunit protein uL14