IL_8RPZ_126

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

8RPZ|1|A|U|2132, 8RPZ|1|A|G|2168, 8RPZ|1|A|A|2169, 8RPZ|1|A|A|2170, 8RPZ|1|A|A|2171, 8RPZ|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPZ|1|A|G|2124
8RPZ|1|A|G|2125
8RPZ|1|A|A|2126
8RPZ|1|A|G|2127
8RPZ|1|A|G|2128
8RPZ|1|A|C|2129
8RPZ|1|A|U|2130
8RPZ|1|A|U|2131
8RPZ|1|A|U|2132
8RPZ|1|A|G|2133
8RPZ|1|A|A|2134
8RPZ|1|A|A|2135
8RPZ|1|A|G|2136
8RPZ|1|A|U|2137
*
8RPZ|1|A|A|2154
8RPZ|1|A|U|2155
8RPZ|1|A|G|2156
8RPZ|1|A|G|2157
8RPZ|1|A|A|2158
8RPZ|1|A|G|2159
8RPZ|1|A|C|2160
8RPZ|1|A|C|2161
8RPZ|1|A|G|2162
8RPZ|1|A|A|2163
8RPZ|1|A|C|2164
8RPZ|1|A|C|2165
8RPZ|1|A|U|2166
8RPZ|1|A|U|2167
8RPZ|1|A|G|2168
8RPZ|1|A|A|2169
8RPZ|1|A|A|2170
8RPZ|1|A|A|2171
8RPZ|1|A|U|2172
8RPZ|1|A|A|2173
8RPZ|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains