IL_8RQ0_122

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC

Length

40 nucleotides

Bulged bases

8RQ0|1|A|U|1061, 8RQ0|1|A|U|1065, 8RQ0|1|A|U|1066, 8RQ0|1|A|A|1067, 8RQ0|1|A|A|1070, 8RQ0|1|A|C|1072

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ0|1|A|G|1055
8RQ0|1|A|G|1056
8RQ0|1|A|A|1057
8RQ0|1|A|U|1058
8RQ0|1|A|G|1059
8RQ0|1|A|U|1060
8RQ0|1|A|U|1061
8RQ0|1|A|G|1062
8RQ0|1|A|G|1063
8RQ0|1|A|C|1064
8RQ0|1|A|U|1065
8RQ0|1|A|U|1066
8RQ0|1|A|A|1067
8RQ0|1|A|G|1068
8RQ0|1|A|A|1069
8RQ0|1|A|A|1070
8RQ0|1|A|G|1071
8RQ0|1|A|C|1072
8RQ0|1|A|A|1073
8RQ0|1|A|G|1074
8RQ0|1|A|C|1075
8RQ0|1|A|C|1076
8RQ0|1|A|A|1077
8RQ0|1|A|U|1078
8RQ0|1|A|C|1079
8RQ0|1|A|A|1080
8RQ0|1|A|U|1081
8RQ0|1|A|U|1082
8RQ0|1|A|U|1083
8RQ0|1|A|A|1084
8RQ0|1|A|A|1085
8RQ0|1|A|A|1086
8RQ0|1|A|G|1087
8RQ0|1|A|A|1088
8RQ0|1|A|A|1089
8RQ0|1|A|A|1090
*
8RQ0|1|A|U|1101
8RQ0|1|A|C|1102
8RQ0|1|A|A|1103
8RQ0|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain M

Large ribosomal subunit protein uL16