IL_8RQ0_125

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUUGAUGUGUAGGAUAGGUGG*CCACCCUUUAAUG

Length

34 nucleotides

Bulged bases

8RQ0|1|A|G|2112, 8RQ0|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ0|1|A|C|2104
8RQ0|1|A|U|2105
8RQ0|1|A|U|2106
8RQ0|1|A|G|2107
8RQ0|1|A|A|2108
8RQ0|1|A|U|2109
8RQ0|1|A|G|2110
8RQ0|1|A|U|2111
8RQ0|1|A|G|2112
8RQ0|1|A|U|2113
8RQ0|1|A|A|2114
8RQ0|1|A|G|2115
8RQ0|1|A|G|2116
8RQ0|1|A|A|2117
8RQ0|1|A|U|2118
8RQ0|1|A|A|2119
8RQ0|1|A|G|2120
8RQ0|1|A|G|2121
8RQ0|1|A|U|2122
8RQ0|1|A|G|2123
8RQ0|1|A|G|2124
*
8RQ0|1|A|C|2174
8RQ0|1|A|C|2175
8RQ0|1|A|A|2176
8RQ0|1|A|C|2177
8RQ0|1|A|C|2178
8RQ0|1|A|C|2179
8RQ0|1|A|U|2180
8RQ0|1|A|U|2181
8RQ0|1|A|U|2182
8RQ0|1|A|A|2183
8RQ0|1|A|A|2184
8RQ0|1|A|U|2185
8RQ0|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains