IL_8RQ0_126

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

8RQ0|1|A|U|2132, 8RQ0|1|A|G|2168, 8RQ0|1|A|A|2169, 8RQ0|1|A|A|2170, 8RQ0|1|A|A|2171, 8RQ0|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ0|1|A|G|2124
8RQ0|1|A|G|2125
8RQ0|1|A|A|2126
8RQ0|1|A|G|2127
8RQ0|1|A|G|2128
8RQ0|1|A|C|2129
8RQ0|1|A|U|2130
8RQ0|1|A|U|2131
8RQ0|1|A|U|2132
8RQ0|1|A|G|2133
8RQ0|1|A|A|2134
8RQ0|1|A|A|2135
8RQ0|1|A|G|2136
8RQ0|1|A|U|2137
*
8RQ0|1|A|A|2154
8RQ0|1|A|U|2155
8RQ0|1|A|G|2156
8RQ0|1|A|G|2157
8RQ0|1|A|A|2158
8RQ0|1|A|G|2159
8RQ0|1|A|C|2160
8RQ0|1|A|C|2161
8RQ0|1|A|G|2162
8RQ0|1|A|A|2163
8RQ0|1|A|C|2164
8RQ0|1|A|C|2165
8RQ0|1|A|U|2166
8RQ0|1|A|U|2167
8RQ0|1|A|G|2168
8RQ0|1|A|A|2169
8RQ0|1|A|A|2170
8RQ0|1|A|A|2171
8RQ0|1|A|U|2172
8RQ0|1|A|A|2173
8RQ0|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains