IL_8RQ2_030

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_030 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2249

The information below is about IL_4V9F_085

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8RQ2|1|A|G|875
8RQ2|1|A|C|876
8RQ2|1|A|A|877
8RQ2|1|A|A|878
8RQ2|1|A|G|879
*
8RQ2|1|A|C|898
8RQ2|1|A|A|899
8RQ2|1|A|A|900
8RQ2|1|A|C|901
8RQ2|1|A|C|902

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16