IL_8RQ2_037
3D structure
- PDB id
- 8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8RQ2|1|A|A|1127, 8RQ2|1|A|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RQ2_037 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0753
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8RQ2|1|A|G|1024
8RQ2|1|A|G|1025
8RQ2|1|A|G|1026
8RQ2|1|A|A|1027
8RQ2|1|A|A|1028
8RQ2|1|A|A|1029
8RQ2|1|A|C|1030
*
8RQ2|1|A|G|1124
8RQ2|1|A|G|1125
8RQ2|1|A|A|1126
8RQ2|1|A|A|1127
8RQ2|1|A|G|1128
8RQ2|1|A|A|1129
8RQ2|1|A|U|1130
8RQ2|1|A|G|1131
8RQ2|1|A|U|1132
8RQ2|1|A|A|1133
8RQ2|1|A|A|1134
8RQ2|1|A|C|1135
8RQ2|1|A|G|1136
8RQ2|1|A|G|1137
8RQ2|1|A|G|1138
8RQ2|1|A|G|1139
8RQ2|1|A|C|1140
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36A
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain J
- Large ribosomal subunit protein uL13
- Chain M
- Large ribosomal subunit protein uL16
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