IL_8RQ2_038

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8RQ2|1|A|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_038 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1104

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8RQ2|1|A|G|1031
8RQ2|1|A|A|1032
8RQ2|1|A|U|1033
8RQ2|1|A|G|1034
*
8RQ2|1|A|C|1121
8RQ2|1|A|G|1122
8RQ2|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

Large ribosomal subunit protein uL16