IL_8RQ2_052

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_052 not in the Motif Atlas

Homologous match to IL_9DFE_054

Geometric discrepancy: 0.1956

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8RQ2|1|A|C|1417
8RQ2|1|A|G|1418
8RQ2|1|A|A|1419
8RQ2|1|A|A|1420
8RQ2|1|A|G|1421
*
8RQ2|1|A|C|1577
8RQ2|1|A|U|1578
8RQ2|1|A|A|1579
8RQ2|1|A|A|1580
8RQ2|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains