IL_8RQ2_064
3D structure
- PDB id
- 8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8RQ2|1|A|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RQ2_064 not in the Motif Atlas
- Geometric match to IL_4WF9_065
- Geometric discrepancy: 0.0869
- The information below is about IL_4WF9_065
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8RQ2|1|A|A|1669
8RQ2|1|A|C|1670
8RQ2|1|A|U|1671
8RQ2|1|A|A|1672
8RQ2|1|A|G|1673
8RQ2|1|A|G|1674
*
8RQ2|1|A|C|1990
8RQ2|1|A|U|1991
8RQ2|1|A|G|1992
8RQ2|1|A|U|1993
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain K
- Large ribosomal subunit protein uL14
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