3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
ACUAGG*CUGU
Length
10 nucleotides
Bulged bases
8RQ2|1|A|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RQ2_064 not in the Motif Atlas
Geometric match to IL_4WF9_065
Geometric discrepancy: 0.0869
The information below is about IL_4WF9_065
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

8RQ2|1|A|A|1669
8RQ2|1|A|C|1670
8RQ2|1|A|U|1671
8RQ2|1|A|A|1672
8RQ2|1|A|G|1673
8RQ2|1|A|G|1674
*
8RQ2|1|A|C|1990
8RQ2|1|A|U|1991
8RQ2|1|A|G|1992
8RQ2|1|A|U|1993

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
Large ribosomal subunit protein uL3
Chain K
Large ribosomal subunit protein uL14

Coloring options:


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