IL_8RQ2_076
3D structure
- PDB id
- 8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 8RQ2|1|A|A|1938, 8RQ2|1|A|U|1944, 8RQ2|1|A|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RQ2_076 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1821
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8RQ2|1|A|C|1934
8RQ2|1|A|G|1935
8RQ2|1|A|A|1936
8RQ2|1|A|A|1937
8RQ2|1|A|A|1938
8RQ2|1|A|U|1939
8RQ2|1|A|U|1940
8RQ2|1|A|C|1941
8RQ2|1|A|C|1942
8RQ2|1|A|U|1943
8RQ2|1|A|U|1944
8RQ2|1|A|G|1945
*
8RQ2|1|A|C|1961
8RQ2|1|A|C|1962
8RQ2|1|A|U|1963
8RQ2|1|A|G|1964
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
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