IL_8RQ2_087

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

8RQ2|1|A|G|2112, 8RQ2|1|A|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ2|1|A|A|2108
8RQ2|1|A|U|2109
8RQ2|1|A|G|2110
8RQ2|1|A|U|2111
8RQ2|1|A|G|2112
8RQ2|1|A|U|2113
8RQ2|1|A|A|2114
8RQ2|1|A|G|2115
8RQ2|1|A|G|2116
8RQ2|1|A|A|2117
8RQ2|1|A|U|2118
8RQ2|1|A|A|2119
8RQ2|1|A|G|2120
*
8RQ2|1|A|C|2178
8RQ2|1|A|C|2179
8RQ2|1|A|U|2180
8RQ2|1|A|U|2181

Current chains

Chain A

23S ribosomal RNA

Nearby chains