3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
GGUGG*CCACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GGUGG,CCACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8RQ2|1|A|G|2120
8RQ2|1|A|G|2121
8RQ2|1|A|U|2122
8RQ2|1|A|G|2123
8RQ2|1|A|G|2124
*
8RQ2|1|A|C|2174
8RQ2|1|A|C|2175
8RQ2|1|A|A|2176
8RQ2|1|A|C|2177
8RQ2|1|A|C|2178

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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