3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
UGUG*UGCA
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RQ2_089 not in the Motif Atlas
Geometric match to IL_6DTD_001
Geometric discrepancy: 0.3359
The information below is about IL_6DTD_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_25872.4
Basepair signature
cWW-cWW-cWH-cWW
Number of instances in this motif group
5

Unit IDs

8RQ2|1|A|U|2137
8RQ2|1|A|G|2138
8RQ2|1|A|U|2139
8RQ2|1|A|G|2140
*
8RQ2|1|A|U|2151
8RQ2|1|A|G|2152
8RQ2|1|A|C|2153
8RQ2|1|A|A|2154

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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