IL_8RQ2_089

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGUG*UGCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_089 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3359

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

8RQ2|1|A|U|2137
8RQ2|1|A|G|2138
8RQ2|1|A|U|2139
8RQ2|1|A|G|2140
*
8RQ2|1|A|U|2151
8RQ2|1|A|G|2152
8RQ2|1|A|C|2153
8RQ2|1|A|A|2154

Current chains

Chain A

23S ribosomal RNA

Nearby chains