3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RQ2_092 not in the Motif Atlas
Homologous match to IL_5J7L_333
Geometric discrepancy: 0.0749
The information below is about IL_5J7L_333
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

8RQ2|1|A|C|2350
8RQ2|1|A|G|2351
8RQ2|1|A|A|2352
8RQ2|1|A|G|2353
*
8RQ2|1|A|C|2364
8RQ2|1|A|G|2365
8RQ2|1|A|A|2366
8RQ2|1|A|G|2367

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL35
Chain W
Large ribosomal subunit protein bL27

Coloring options:


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