IL_8RQ2_101

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

8RQ2|1|A|A|2572, 8RQ2|1|A|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_101 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0838

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8RQ2|1|A|C|2512
8RQ2|1|A|A|2513
*
8RQ2|1|A|U|2571
8RQ2|1|A|A|2572
8RQ2|1|A|C|2573
8RQ2|1|A|G|2574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein uL13

Chain z

Apidaecins type 88