IL_8RQ2_123

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_123 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0672

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8RQ2|1|A|G|1666
8RQ2|1|A|G|1667
8RQ2|1|A|A|1668
8RQ2|1|A|A|1669
8RQ2|1|A|C|1670
8RQ2|1|A|U|1671
8RQ2|1|A|A|1672
8RQ2|1|A|G|1673
8RQ2|1|A|G|1674
*
8RQ2|1|A|C|1990
8RQ2|1|A|U|1991
8RQ2|1|A|G|1992
8RQ2|1|A|U|1993
8RQ2|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain K

Large ribosomal subunit protein uL14