IL_8RQ2_126

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

8RQ2|1|A|U|2132, 8RQ2|1|A|G|2168, 8RQ2|1|A|A|2169, 8RQ2|1|A|A|2170, 8RQ2|1|A|A|2171, 8RQ2|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ2|1|A|G|2124
8RQ2|1|A|G|2125
8RQ2|1|A|A|2126
8RQ2|1|A|G|2127
8RQ2|1|A|G|2128
8RQ2|1|A|C|2129
8RQ2|1|A|U|2130
8RQ2|1|A|U|2131
8RQ2|1|A|U|2132
8RQ2|1|A|G|2133
8RQ2|1|A|A|2134
8RQ2|1|A|A|2135
8RQ2|1|A|G|2136
8RQ2|1|A|U|2137
*
8RQ2|1|A|A|2154
8RQ2|1|A|U|2155
8RQ2|1|A|G|2156
8RQ2|1|A|G|2157
8RQ2|1|A|A|2158
8RQ2|1|A|G|2159
8RQ2|1|A|C|2160
8RQ2|1|A|C|2161
8RQ2|1|A|G|2162
8RQ2|1|A|A|2163
8RQ2|1|A|C|2164
8RQ2|1|A|C|2165
8RQ2|1|A|U|2166
8RQ2|1|A|U|2167
8RQ2|1|A|G|2168
8RQ2|1|A|A|2169
8RQ2|1|A|A|2170
8RQ2|1|A|A|2171
8RQ2|1|A|U|2172
8RQ2|1|A|A|2173
8RQ2|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains