IL_8RRI_033

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

8RRI|1|A|A|2601, 8RRI|1|A|U|2602, 8RRI|1|A|U|2607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RRI|1|A|C|2597
8RRI|1|A|A|2598
8RRI|1|A|U|2599
8RRI|1|A|A|2600
8RRI|1|A|A|2601
8RRI|1|A|U|2602
8RRI|1|A|C|2603
8RRI|1|A|A|2604
8RRI|1|A|C|2605
8RRI|1|A|U|2606
8RRI|1|A|U|2607
8RRI|1|A|G|2608
*
8RRI|1|A|C|2624
8RRI|1|A|C|2625
8RRI|1|A|U|2626
8RRI|1|A|G|2627

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA