IL_8RRI_043

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_043 not in the Motif Atlas

Geometric match to IL_3V7E_003

Geometric discrepancy: 0.2098

The information below is about IL_3V7E_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8RRI|1|A|G|2943
8RRI|1|A|C|2944
8RRI|1|A|A|2945
8RRI|1|A|A|2946
*
8RRI|1|A|U|2980
8RRI|1|A|A|2981
8RRI|1|A|C|2982

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial