IL_8RRI_044

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8RRI|1|A|U|2978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_044 not in the Motif Atlas

Homologous match to IL_9DFE_094

Geometric discrepancy: 0.1123

The information below is about IL_9DFE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8RRI|1|A|A|2946
8RRI|1|A|U|2947
8RRI|1|A|C|2948
*
8RRI|1|A|G|2976
8RRI|1|A|G|2977
8RRI|1|A|U|2978
8RRI|1|A|U|2979
8RRI|1|A|U|2980

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial