IL_8RRI_045

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCUAG*CAACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_045 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1971

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8RRI|1|A|U|2953
8RRI|1|A|C|2954
8RRI|1|A|U|2955
8RRI|1|A|A|2956
8RRI|1|A|G|2957
*
8RRI|1|A|C|2967
8RRI|1|A|A|2968
8RRI|1|A|A|2969
8RRI|1|A|C|2970
8RRI|1|A|A|2971

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial