IL_8RRI_064

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUU*AA

Length

5 nucleotides

Bulged bases

8RRI|1|AA|U|831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_064 not in the Motif Atlas

Homologous match to IL_5J7L_017

Geometric discrepancy: 0.3104

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8RRI|1|AA|U|830
8RRI|1|AA|U|831
8RRI|1|AA|U|832
*
8RRI|1|AA|A|855
8RRI|1|AA|A|856

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

Small ribosomal subunit protein mS25