IL_8RUJ_003

3D structure

PDB id

8RUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and ARN25850 after 1h soaking

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

8RUJ|1|A|A|106, 8RUJ|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RUJ|1|A|C|76
8RUJ|1|A|A|77
8RUJ|1|A|A|78
8RUJ|1|A|G|79
*
8RUJ|1|A|U|103
8RUJ|1|A|G|104
8RUJ|1|A|A|105
8RUJ|1|A|A|106
8RUJ|1|A|G|107
8RUJ|1|A|G|108
8RUJ|1|A|A|109
8RUJ|1|A|A|110
8RUJ|1|A|G|111

Current chains

Chain A

Domains 1-5

Nearby chains